CDS

Accession Number TCMCG007C11813
gbkey CDS
Protein Id XP_009126631.1
Location complement(join(5162877..5162992,5163089..5164242,5164329..5164483,5164592..5164672,5164748..5164822,5164913..5165353))
Gene LOC103851531
GeneID 103851531
Organism Brassica rapa

Protein

Length 673aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA249065
db_source XM_009128383.3
Definition protein GAMETOPHYTE DEFECTIVE 1 isoform X1 [Brassica rapa]

EGGNOG-MAPPER Annotation

COG_category J
Description RNase P subunit p30
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03009        [VIEW IN KEGG]
ko03016        [VIEW IN KEGG]
ko03029        [VIEW IN KEGG]
KEGG_ko ko:K03539        [VIEW IN KEGG]
EC 3.1.26.5        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway ko03008        [VIEW IN KEGG]
ko03013        [VIEW IN KEGG]
map03008        [VIEW IN KEGG]
map03013        [VIEW IN KEGG]
GOs GO:0000172        [VIEW IN EMBL-EBI]
GO:0000966        [VIEW IN EMBL-EBI]
GO:0001682        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005655        [VIEW IN EMBL-EBI]
GO:0005730        [VIEW IN EMBL-EBI]
GO:0005732        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006399        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0008033        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0030677        [VIEW IN EMBL-EBI]
GO:0030681        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0034470        [VIEW IN EMBL-EBI]
GO:0034471        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034660        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044452        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0090305        [VIEW IN EMBL-EBI]
GO:0090501        [VIEW IN EMBL-EBI]
GO:0090502        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0099116        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1902494        [VIEW IN EMBL-EBI]
GO:1902555        [VIEW IN EMBL-EBI]
GO:1905348        [VIEW IN EMBL-EBI]
GO:1990904        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGCCTTCTTCGACCTAAACGTACCGTACAGCTACCCGTCCCAATCAGGCGGGAAGGAAGCCGCCGTCGCCGTCGCAAACAAACTCCGCGTAAAGCTCGCCACGAAAGCCATGGAGCTAGGCTACGTCGGAATCGCGCATAACCATTCGATCGGCGGCGTAATGACGGAGAAGGACTCTTGCACGATCCCTCTTCTCACTCTCGGATCTCTCATCAAAGCCGCTCCGCGATTATCATCCTCCGTCGCGTTCCATCGCGACTTGCTCGGCGTCCCTCGATCCACTCCGTTTCGGCAGTACACGCGCGCCACCGTCAAGCTAGAGAGCAAGGCTCAGTGCCTGGGGTTGAACTCCGGGAATCCGGTTCTGAAGAGCTATGATATCGTTGCCGTTAGGCCGATGAATCAGTACGCGTTCGATCAAGCTTGTACGAAAGCTGAGGTTGATATCATCTCGATTGATTTCTCGAATTTGCCGTTTCGGTTGATGCATCCCACGGTTAAAGCTGCTATTAAGCGAGGAGTTTACTTTGAGATCAAGTACTCTGATCTCTTAAAGGATGCTGAGAAGAGAAGACAAGTTATATCCAATGCTAAGTTACTGGTGGATTGGACTAAAGGGAAGAATCTGATTATATCGAGTGGTTCACCTTCAGTCACTGAACTTAGAGGTCCAAACGATGTTATCAACCTCATGTCTTTGCTTGGACTCTCTACTGAAAGAGCCAGAGCTGCAGTTTCAAAAAACTGTAGGAATATGATAGCCAAGATTTTAAAGAAGAAGCGGTTTCACAAAGAAGCTGTTAAGGTTGAGTTGCTTTCTTCTAGTGATACCTTTAGCCTCGAACAGACTCTGTCTGGTGATTTCATGAAATGGGATCCCATCTCAAGTGGTGAAGGTGACATGCTCTTGGAAGATCTCGCGAAGGCTTTTGATGCCACCACACGTGCTGTGGCGAATAAATCCTCTAAGGCGATTGATGTCACCTCTGATCGTAAAGGCTTGCCATCACATGGTTTCCGGCTCACTGATATTCTAGGAAGTGAACCTTCGACTCAGGAAACTGCAGATAAGATGATTGACGACGCACCGGTGCACTGTAAGAGTCAAGTTTCTGATGCATGTATGGCTGATTCAGATATACCTTCATCTGTTGATAATCGTCTGGAAAACAAAACCATTAGCCAAATTGAGATATCTGAAGATGACAACAAAGTGGAACCTACAACTATTGTCCCCCTGAGGAAATGCAGTACCAGCCAGAGACAGGGGCTTTCGGTGCAAGATCAAGCATCTGCATCCGTTACACTGATAAGATGCACAAAGTCTGATGCAGCTTCTGATGTCAACATGCAGACTGAGTTGGAGTCGGAAGATAAATCTGTATCGCCATCAAAAATCGGCCACGTGGTCCCACAAAGTCTTGTTGAAAATTTAAAGATGGAAACTATCCTTGTTCATGATCAGGTCTCACTGGACGAAGTAAGCAAAGAAGAAGCTATTTCTGGTCATGCTAAGATTGAGCACTCTGTATCAATTGATGGCGTTGAGATGGAAATCGATGGTTCTTTGGAAGCAAATCATGACCAGTACATGGAGGTGACAGTGGAAGACCAGAAGCATGAAACAGGTGACAGTAATATAAATCTTCCTAACTTATCCTCCTCTGAGGCTACTGATTTGCTAAGAAATTCAGACAACTCTCTCAGTCCAGAGGCGGCTGGACAAGACCATGACCAAGTACCAAGCTTAGACTCCAGTGAGGCGGAGCTTGGGGAAGAACCAGCAGTTCCATACAACAACACCATTGAAATATCAATGGAAGACAAGAAAGAAAGCGGGAGAGAAATTGAAACTAATCAACAAGTCCATGTCCAGTCTGAAAGAAACAATGTCAGAAACTCAGGGAAGACACGAGCTAAGAGGAGTAGAACTCGATTAACGCAGCTACAACCTTTGAAGCCTTTTCTACTTCATCGTTTCAAACAAATCAGTAAAAGACGAAAACATAGAAGAGGTTGA
Protein:  
MAFFDLNVPYSYPSQSGGKEAAVAVANKLRVKLATKAMELGYVGIAHNHSIGGVMTEKDSCTIPLLTLGSLIKAAPRLSSSVAFHRDLLGVPRSTPFRQYTRATVKLESKAQCLGLNSGNPVLKSYDIVAVRPMNQYAFDQACTKAEVDIISIDFSNLPFRLMHPTVKAAIKRGVYFEIKYSDLLKDAEKRRQVISNAKLLVDWTKGKNLIISSGSPSVTELRGPNDVINLMSLLGLSTERARAAVSKNCRNMIAKILKKKRFHKEAVKVELLSSSDTFSLEQTLSGDFMKWDPISSGEGDMLLEDLAKAFDATTRAVANKSSKAIDVTSDRKGLPSHGFRLTDILGSEPSTQETADKMIDDAPVHCKSQVSDACMADSDIPSSVDNRLENKTISQIEISEDDNKVEPTTIVPLRKCSTSQRQGLSVQDQASASVTLIRCTKSDAASDVNMQTELESEDKSVSPSKIGHVVPQSLVENLKMETILVHDQVSLDEVSKEEAISGHAKIEHSVSIDGVEMEIDGSLEANHDQYMEVTVEDQKHETGDSNINLPNLSSSEATDLLRNSDNSLSPEAAGQDHDQVPSLDSSEAELGEEPAVPYNNTIEISMEDKKESGREIETNQQVHVQSERNNVRNSGKTRAKRSRTRLTQLQPLKPFLLHRFKQISKRRKHRRG